SubtiBank SubtiBank
yxbB [2018-09-25 16:12:16]
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yxbB [2018-09-25 16:12:16]

unknown
locus
BSU39890
pI
4.57
mw
28.07 kDa
protein length
244 aa Sequence Blast
gene length
732 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
yxaP
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    4,097,416 → 4,098,150

    The protein

    Protein family

  • methyltransferase superfamily (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|787BB72119DB1321A8281D7C46FED28CAEDBC97C|yxbB]-[gene|88B01CC87394AEE693A98574F9343EBF99F0D60E|yxbA]-[gene|A15368CD02487EBC1AF999FED34672E38167BCB2|yxnB]
    description
    [Pubmed|20185509]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|20185509], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY]: repression, [Pubmed|12618455], in [regulon|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY regulon]
  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|15101989], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

    • regulation

  • repressed by glucose (8-fold) [Pubmed|12850135]
    • view in new tab

    genes
    [gene|787BB72119DB1321A8281D7C46FED28CAEDBC97C|yxbB]-[gene|88B01CC87394AEE693A98574F9343EBF99F0D60E|yxbA]-[gene|A15368CD02487EBC1AF999FED34672E38167BCB2|yxnB]-[gene|9446D9C88CBBBC5A08495D8AA49A92A9F47F2C9B|asnH]-[gene|BF0E188249161B3CC24D223FDD48B820EBED8F55|yxaM]
    description
    [Pubmed|10746760]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|20185509], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY]: repression, [Pubmed|12618455], in [regulon|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY regulon]
  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|15101989], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

    • regulation

  • repressed by glucose (8-fold) [Pubmed|12850135]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B690 (yxbB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1689 NBRP B. subtilis, Japan]
  • BKE39890 (Δ[gene|787BB72119DB1321A8281D7C46FED28CAEDBC97C|yxbB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39890 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTCAGCATCCTCCTTA, downstream forward: _UP4_AAAGAAAAGGAAGGTGCATT
  • BKK39890 (Δ[gene|787BB72119DB1321A8281D7C46FED28CAEDBC97C|yxbB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39890 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTCAGCATCCTCCTTA, downstream forward: _UP4_AAAGAAAAGGAAGGTGCATT

    • References

  • 10746760,18083814,12618455,10498721,12618455,15101989,12850135,20185509,20525796,21815947